Last updated on 2024-08-15 20:48:20 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.2.6 | 14.33 | 232.87 | 247.20 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 1.2.6 | 11.24 | 161.34 | 172.58 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.2.6 | 392.86 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.2.6 | 382.30 | OK | |||
| r-devel-windows-x86_64 | 1.2.6 | 16.00 | 360.00 | 376.00 | NOTE | --no-vignettes |
| r-patched-linux-x86_64 | 1.2.6 | 21.48 | 218.60 | 240.08 | OK | |
| r-release-linux-x86_64 | 1.2.6 | 16.31 | 226.10 | 242.41 | OK | |
| r-release-macos-arm64 | 1.2.6 | 174.00 | OK | |||
| r-release-macos-x86_64 | 1.2.6 | 256.00 | OK | |||
| r-release-windows-x86_64 | 1.2.6 | 16.00 | 326.00 | 342.00 | OK | --no-vignettes |
| r-oldrel-macos-arm64 | 1.2.6 | 161.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.2.6 | 323.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.2.6 | 23.00 | 359.00 | 382.00 | ERROR | --no-vignettes |
Version: 1.2.6
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
mkinpredict.Rd: ode
nlme.Rd: groupedData
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 1.2.6
Flags: --no-vignettes
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
mkinpredict.Rd: ode
nlme.Rd: groupedData
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavor: r-devel-windows-x86_64
Version: 1.2.6
Flags: --no-vignettes
Check: tests
Result: ERROR
Running 'testthat.R' [175s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(mkin)
>
> test_check("mkin")
ERROR(s) during compilation: source code errors or compiler configuration errors!
make cmd is
make -f "D:/RCompile/recent/R-4.3.3/etc/x64/Makeconf" -f "D:/RCompile/recent/R-4.3.3/share/make/winshlib.mk" SHLIB="file2f678759691e.dll" WIN=64 TCLBIN= OBJECTS="file2f678759691e.o"
make would use
make[1]: Entering directory '/d/temp/RtmpuYYktB'
if test "zfile2f678759691e.o" != "z"; then \
if test -e "file2f678759691e-win.def"; then \
echo gcc -shared -s -static-libgcc -o file2f678759691e.dll file2f678759691e-win.def file2f678759691e.o -L"d:/rtools43/x86_64-w64-mingw32.static.posix/lib/x64" -L"d:/rtools43/x86_64-w64-mingw32.static.posix/lib" -L"D:/RCompile/recent/R-4.3.3/bin/x64" -lR ; \
gcc -shared -s -static-libgcc -o file2f678759691e.dll file2f678759691e-win.def file2f678759691e.o -L"d:/rtools43/x86_64-w64-mingw32.static.posix/lib/x64" -L"d:/rtools43/x86_64-w64-mingw32.static.posix/lib" -L"D:/RCompile/recent/R-4.3.3/bin/x64" -lR ; \
else \
echo EXPORTS > tmp.def; \
nm file2f678759691e.o | sed -n 's/^.* [BCDRT] / /p' | sed -e '/[.]refptr[.]/d' -e '/[.]weak[.]/d' | sed 's/[^ ][^ ]*/"&"/g' >> tmp.def; \
echo gcc -shared -s -static-libgcc -o file2f678759691e.dll tmp.def file2f678759691e.o -L"d:/rtools43/x86_64-w64-mingw32.static.posix/lib/x64" -L"d:/rtools43/x86_64-w64-mingw32.static.posix/lib" -L"D:/RCompile/recent/R-4.3.3/bin/x64" -lR ; \
gcc -shared -s -static-libgcc -o file2f678759691e.dll tmp.def file2f678759691e.o -L"d:/rtools43/x86_64-w64-mingw32.static.posix/lib/x64" -L"d:/rtools43/x86_64-w64-mingw32.static.posix/lib" -L"D:/RCompile/recent/R-4.3.3/bin/x64" -lR ; \
rm -f tmp.def; \
fi \
fi
make[1]: Leaving directory '/d/temp/RtmpuYYktB'
Program source:
1: #include <R.h>
2:
3:
4: static double parms [3];
5: #define k_DMTA parms[0]
6: #define f_DMTA_to_M23 parms[1]
7: #define k_M23 parms[2]
8:
9: void initpar(void (* odeparms)(int *, double *)) {
10: int N = 3;
11: odeparms(&N, parms);
12: }
13:
14:
15: void diffs ( int * n, double * t, double * y, double * f, double * rpar, int * ipar ) {
16:
17: f[0] = - k_DMTA * y[0];
18: f[1] = + f_DMTA_to_M23 * k_DMTA * y[0] - k_M23 * y[1];
19: }
Compilation ERROR, function(s)/method(s) not created!
[ FAIL 1 | WARN 2 | SKIP 31 | PASS 117 ]
══ Skipped tests (31) ══════════════════════════════════════════════════════════
• On CRAN (30): 'test_FOCUS_D_UBA_expertise.R:32:3',
'test_FOCUS_chi2_error_level.R:23:3', 'test_FOCUS_chi2_error_level.R:33:3',
'test_analytical.R:4:3', 'test_analytical.R:51:3', 'test_aw.R:4:3',
'test_dmta.R:5:3', 'test_dmta.R:82:3', 'test_error_models.R:4:3',
'test_error_models.R:10:3', 'test_error_models.R:16:3',
'test_error_models.R:55:3', 'test_mhmkin.R:5:3', 'test_mixed.R:18:3',
'test_mixed.R:26:3', 'test_mixed.R:52:3', 'test_mixed.R:91:3',
'test_mixed.R:117:3', 'test_mkinds.R:12:3', 'test_multistart.R:4:3',
'test_nafta.R:7:3', 'test_nafta.R:29:3', 'test_nlme.R:98:3',
'test_plot.R:4:3', 'test_saemix_parent.R:5:3',
'test_schaefer07_complex_case.R:5:3',
'test_synthetic_data_for_UBA_2014.R:5:3',
'test_synthetic_data_for_UBA_2014.R:24:3', 'test_tests.R:38:3',
'test_twa.R:4:3'
• This still takes almost 2.5 minutes although we do not solve ODEs (1):
'test_saemix_parent.R:143:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_compiled_symbols.R:52:5'): We can safely use compiled code ───
file.remove("test_dlls/sfo_sfo.dll") is not TRUE
`actual`: FALSE
`expected`: TRUE
[ FAIL 1 | WARN 2 | SKIP 31 | PASS 117 ]
Deleting unused snapshots:
• multistart/llhist-for-dfop-sfo-fit.svg
• multistart/llhist-for-sfo-fit.svg
• multistart/mixed-model-fit-for-saem-object-with-mkin-transformations.svg
• multistart/parplot-for-dfop-sfo-fit.svg
• multistart/parplot-for-sfo-fit.svg
• nafta/nafta-sop-appendix-b.svg
• nafta/plot-nafta-analysis.svg
• plot/mixed-model-fit-for-mmkin-object.svg
• plot/mixed-model-fit-for-nlme-object.svg
• plot/mixed-model-fit-for-saem-object-with-saemix-transformations.svg
• plot/mkinerrplot-for-focus-c-sfo.svg
• plot/mkinfit-plot-for-focus-c-with-defaults.svg
• plot/mkinfit-plot-for-focus-c-with-residuals-like-in-gmkin.svg
• plot/mkinfit-plot-for-focus-c-with-sep-true.svg
• plot/mkinparplot-for-focus-c-sfo.svg
• plot/mmkin-plot-for-focus-c.svg
• plot/mmkin-plot-for-sfo-focus-c-and-d.svg
• plot/plot-err-for-focus-d.svg
• plot/plot-errmod-with-focus-c-tc.svg
• plot/plot-errmod-with-focus-d-obs-eigen.svg
• plot/plot-res-for-focus-c.svg
• plot/plot-res-for-focus-d.svg
Error: Test failures
Execution halted
Flavor: r-oldrel-windows-x86_64