Last updated on 2025-01-09 01:49:45 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.2.3 | ERROR | ||||
| r-devel-linux-x86_64-debian-gcc | 1.2.3 | 34.89 | 124.38 | 159.27 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.2.3 | 384.81 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.2.3 | 394.68 | OK | |||
| r-devel-windows-x86_64 | 1.2.3 | 55.00 | 199.00 | 254.00 | OK | |
| r-patched-linux-x86_64 | 1.2.3 | 53.95 | 158.56 | 212.51 | OK | |
| r-release-linux-x86_64 | 1.2.3 | 48.55 | 163.17 | 211.72 | OK | |
| r-release-macos-arm64 | 1.2.3 | 111.00 | NOTE | |||
| r-release-macos-x86_64 | 1.2.3 | 190.00 | NOTE | |||
| r-release-windows-x86_64 | 1.2.3 | 56.00 | 192.00 | 248.00 | NOTE | |
| r-oldrel-macos-arm64 | 1.2.3 | 103.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 1.2.3 | 180.00 | NOTE | |||
| r-oldrel-windows-x86_64 | 1.2.3 | 67.00 | 237.00 | 304.00 | NOTE |
Version: 1.2.3
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘Seurat.Rmd’ using rmarkdown
Quitting from lines 20-25 [setup] (Seurat.Rmd)
Error: processing vignette 'Seurat.Rmd' failed with diagnostics:
there is no package called 'Seurat'
--- failed re-building ‘Seurat.Rmd’
--- re-building ‘detailedWalkthrough.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/harmony.Rcheck/vign_test/harmony/vignettes/detailedWalkthrough_files/figure-html/unnamed-chunk-3-1.png
480x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 63797 bytes
Input file size = 63959 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 46493
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 46493
Output IDAT size = 46493 bytes (17304 bytes decrease)
Output file size = 46571 bytes (17388 bytes = 27.19% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/harmony.Rcheck/vign_test/harmony/vignettes/detailedWalkthrough_files/figure-html/unnamed-chunk-5-1.png
480x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 60276 bytes
Input file size = 60438 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 44664
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 44664
Output IDAT size = 44664 bytes (15612 bytes decrease)
Output file size = 44742 bytes (15696 bytes = 25.97% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/harmony.Rcheck/vign_test/harmony/vignettes/detailedWalkthrough_files/figure-html/unnamed-chunk-6-1.png
768x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 46945 bytes
Input file size = 47083 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36738
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36738
Output IDAT size = 36738 bytes (10207 bytes decrease)
Output file size = 36816 bytes (10267 bytes = 21.81% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/harmony.Rcheck/vign_test/harmony/vignettes/detailedWalkthrough_files/figure-html/unnamed-chunk-7-1.png
384x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 40132 bytes
Input file size = 40258 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 30612
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 30612
Output IDAT size = 30612 bytes (9520 bytes decrease)
Output file size = 30690 bytes (9568 bytes = 23.77% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/harmony.Rcheck/vign_test/harmony/vignettes/detailedWalkthrough_files/figure-html/unnamed-chunk-9-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 63204 bytes
Input file size = 63366 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 49596
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 49596
Output IDAT size = 49596 bytes (13608 bytes decrease)
Output file size = 49674 bytes (13692 bytes = 21.61% decrease)
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/harmony.Rcheck/vign_test/harmony/vignettes/detailedWalkthrough_files/figure-html/unnamed-chunk-16-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 39874 bytes
Input file size = 40000 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 29602
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 29602
Output IDAT size = 29602 bytes (10272 bytes decrease)
Output file size = 29680 bytes (10320 bytes = 25.80% decrease)
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/harmony.Rcheck/vign_test/harmony/vignettes/detailedWalkthrough_files/figure-html/unnamed-chunk-26-1.png
480x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 61530 bytes
Input file size = 61692 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 46539
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 46539
Output IDAT size = 46539 bytes (14991 bytes decrease)
Output file size = 46617 bytes (15075 bytes = 24.44% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/harmony.Rcheck/vign_test/harmony/vignettes/detailedWalkthrough_files/figure-html/unnamed-chunk-27-1.png
768x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 99546 bytes
Input file size = 99768 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 75041
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 75041
Output IDAT size = 75041 bytes (24505 bytes decrease)
Output file size = 75119 bytes (24649 bytes = 24.71% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/harmony.Rcheck/vign_test/harmony/vignettes/detailedWalkthrough_files/figure-html/unnamed-chunk-28-1.png
480x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 26076 bytes
Input file size = 26190 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20245
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20245
Output IDAT size = 20245 bytes (5831 bytes decrease)
Output file size = 20323 bytes (5867 bytes = 22.40% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/harmony.Rcheck/vign_test/harmony/vignettes/detailedWalkthrough_files/figure-html/unnamed-chunk-30-1.png
480x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 71467 bytes
Input file size = 71641 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 61205
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 61205
Output IDAT size = 61205 bytes (10262 bytes decrease)
Output file size = 61283 bytes (10358 bytes = 14.46% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/harmony.Rcheck/vign_test/harmony/vignettes/detailedWalkthrough_files/figure-html/unnamed-chunk-32-1.png
576x576 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 82703 bytes
Input file size = 82901 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 59502
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 59502
Output IDAT size = 59502 bytes (23201 bytes decrease)
Output file size = 59580 bytes (23321 bytes = 28.13% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/harmony.Rcheck/vign_test/harmony/vignettes/detailedWalkthrough_files/figure-html/unnamed-chunk-34-1.png
576x576 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 52850 bytes
Input file size = 53000 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 41189
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 41189
Output IDAT size = 41189 bytes (11661 bytes decrease)
Output file size = 41267 bytes (11733 bytes = 22.14% decrease)
Warning: ggrepel: 12 unlabeled data points (too many overlaps). Consider increasing max.overlaps
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/harmony.Rcheck/vign_test/harmony/vignettes/detailedWalkthrough_files/figure-html/unnamed-chunk-36-1.png
384x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 8271 bytes
Input file size = 9141 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7576
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7576
Output IDAT size = 7576 bytes (695 bytes decrease)
Output file size = 7654 bytes (1487 bytes = 16.27% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/harmony.Rcheck/vign_test/harmony/vignettes/detailedWalkthrough_files/figure-html/unnamed-chunk-38-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 11247 bytes
Input file size = 11337 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7689
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7689
Output IDAT size = 7689 bytes (3558 bytes decrease)
Output file size = 7767 bytes (3570 bytes = 31.49% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/harmony.Rcheck/vign_test/harmony/vignettes/detailedWalkthrough_files/figure-html/unnamed-chunk-40-1.png
480x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 58930 bytes
Input file size = 59092 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 43929
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 43929
Output IDAT size = 43929 bytes (15001 bytes decrease)
Output file size = 44007 bytes (15085 bytes = 25.53% decrease)
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/harmony.Rcheck/vign_test/harmony/vignettes/detailedWalkthrough_files/figure-html/unnamed-chunk-41-1.png
480x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 61322 bytes
Input file size = 61484 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 46171
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 46171
Output IDAT size = 46171 bytes (15151 bytes decrease)
Output file size = 46249 bytes (15235 bytes = 24.78% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/harmony.Rcheck/vign_test/harmony/vignettes/detailedWalkthrough_files/figure-html/unnamed-chunk-41-2.png
480x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 59989 bytes
Input file size = 60151 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 45489
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 45489
Output IDAT size = 45489 bytes (14500 bytes decrease)
Output file size = 45567 bytes (14584 bytes = 24.25% decrease)
--- finished re-building ‘detailedWalkthrough.Rmd’
--- re-building ‘quickstart.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/harmony.Rcheck/vign_test/harmony/vignettes/quickstart_files/figure-html/unnamed-chunk-4-1.png
480x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 22584 bytes
Input file size = 22686 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16669
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16669
Output IDAT size = 16669 bytes (5915 bytes decrease)
Output file size = 16747 bytes (5939 bytes = 26.18% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/harmony.Rcheck/vign_test/harmony/vignettes/quickstart_files/figure-html/unnamed-chunk-6-1.png
480x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 21256 bytes
Input file size = 21358 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15913
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15913
Output IDAT size = 15913 bytes (5343 bytes decrease)
Output file size = 15991 bytes (5367 bytes = 25.13% decrease)
--- finished re-building ‘quickstart.Rmd’
SUMMARY: processing the following file failed:
‘Seurat.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.2.3
Check: installed package size
Result: NOTE
installed size is 11.7Mb
sub-directories of 1Mb or more:
data 2.9Mb
doc 2.4Mb
libs 6.2Mb
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64