Last updated on 2025-01-09 01:49:42 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.4 | ERROR | ||||
| r-devel-linux-x86_64-debian-gcc | 1.4 | 29.52 | 249.93 | 279.45 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.4 | 642.95 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.4 | 620.86 | OK | |||
| r-devel-windows-x86_64 | 1.4 | 42.00 | 288.00 | 330.00 | ERROR | |
| r-patched-linux-x86_64 | 1.4 | 31.91 | 325.97 | 357.88 | ERROR | |
| r-release-linux-x86_64 | 1.4 | 38.88 | 325.62 | 364.50 | OK | |
| r-release-macos-arm64 | 1.4 | 179.00 | OK | |||
| r-release-macos-x86_64 | 1.4 | 256.00 | OK | |||
| r-release-windows-x86_64 | 1.4 | 41.00 | 296.00 | 337.00 | OK | |
| r-oldrel-macos-arm64 | 1.4 | 168.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.4 | 345.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.4 | 52.00 | 382.00 | 434.00 | OK |
Version: 1.4
Check: package dependencies
Result: ERROR
Packages required but not available:
'diffcoexp', 'geneExpressionFromGEO', 'GEOquery'
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.4
Check: examples
Result: ERROR
Running examples in ‘easyDifferentialGeneCoexpression-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: easyDifferentialGeneCoexpression
> ### Title: Function that computes the differential coexpression of a list
> ### of probesets in a specific dataset and returns the most significant
> ### pairs
> ### Aliases: easyDifferentialGeneCoexpression
>
> ### ** Examples
>
>
> probesetList <- c("200738_s_at", "217356_s_at", "206686_at")
> verboseFlag <- "TRUE"
> batchCorrection <- "TRUE"
> signDiffCoexpressGenePairs <- easyDifferentialGeneCoexpression(probesetList,
+ "GSE3268", "description", "Normal", "Tumor", verboseFlag)
Processed URL: https://ftp.ncbi.nlm.nih.gov/geo/series/GSE3nnn/GSE3268
Error in .Internal(open(con, open, blocking)) :
reached elapsed time limit
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.4
Check: examples
Result: ERROR
Running examples in 'easyDifferentialGeneCoexpression-Ex.R' failed
The error most likely occurred in:
> ### Name: easyDifferentialGeneCoexpression
> ### Title: Function that computes the differential coexpression of a list
> ### of probesets in a specific dataset and returns the most significant
> ### pairs
> ### Aliases: easyDifferentialGeneCoexpression
>
> ### ** Examples
>
>
> probesetList <- c("200738_s_at", "217356_s_at", "206686_at")
> verboseFlag <- "TRUE"
> batchCorrection <- "TRUE"
> signDiffCoexpressGenePairs <- easyDifferentialGeneCoexpression(probesetList,
+ "GSE3268", "description", "Normal", "Tumor", verboseFlag)
Processed URL: https://ftp.ncbi.nlm.nih.gov/geo/series/GSE3nnn/GSE3268
Found 1 file(s)
GSE3268_series_matrix.txt.gz
Error in .Call(R_download_curl, url, tmp, quiet, mode, handle, nonblocking) :
reached elapsed time limit
Execution halted
Flavor: r-devel-windows-x86_64
Version: 1.4
Check: examples
Result: ERROR
Running examples in ‘easyDifferentialGeneCoexpression-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: easyDifferentialGeneCoexpression
> ### Title: Function that computes the differential coexpression of a list
> ### of probesets in a specific dataset and returns the most significant
> ### pairs
> ### Aliases: easyDifferentialGeneCoexpression
>
> ### ** Examples
>
>
> probesetList <- c("200738_s_at", "217356_s_at", "206686_at")
> verboseFlag <- "TRUE"
> batchCorrection <- "TRUE"
> signDiffCoexpressGenePairs <- easyDifferentialGeneCoexpression(probesetList,
+ "GSE3268", "description", "Normal", "Tumor", verboseFlag)
Processed URL: https://ftp.ncbi.nlm.nih.gov/geo/series/GSE3nnn/GSE3268
Found 1 file(s)
GSE3268_series_matrix.txt.gz
Error in .Call(R_curl_fetch_memory, enc2utf8(url), handle, nonblocking) :
reached elapsed time limit
Execution halted
Flavor: r-patched-linux-x86_64