Last updated on 2025-01-09 01:49:45 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.3.12 | ERROR | ||||
| r-devel-linux-x86_64-debian-gcc | 2.3.12 | 36.90 | 526.77 | 563.67 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 2.3.12 | 1240.66 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 2.3.12 | 1103.23 | OK | |||
| r-devel-windows-x86_64 | 2.3.12 | 53.00 | 564.00 | 617.00 | NOTE | |
| r-patched-linux-x86_64 | 2.3.12 | 58.59 | 669.91 | 728.50 | OK | |
| r-release-linux-x86_64 | 2.3.12 | 46.17 | 665.24 | 711.41 | OK | |
| r-release-macos-arm64 | 2.3.12 | 181.00 | NOTE | |||
| r-release-macos-x86_64 | 2.3.12 | 286.00 | NOTE | |||
| r-release-windows-x86_64 | 2.3.12 | 54.00 | 558.00 | 612.00 | OK | |
| r-oldrel-macos-arm64 | 2.3.12 | 197.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 2.3.12 | 419.00 | NOTE | |||
| r-oldrel-windows-x86_64 | 2.3.12 | 69.00 | 538.00 | 607.00 | NOTE |
Version: 2.3.12
Check: package dependencies
Result: ERROR
Package required but not available: ‘BSgenome’
Packages suggested but not available for checking:
'BSgenome.Hsapiens.1000genomes.hs37d5',
'BSgenome.Hsapiens.UCSC.hg38', 'BSgenome.Mmusculus.UCSC.mm10'
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-devel-linux-x86_64-debian-clang
Version: 2.3.12
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
AnnotateDBSVCF.Rd: BSgenome
AnnotateSBSVCF.Rd: BSgenome
GeneExpressionData.Rd: data.table
ICAMS.Rd: BSgenome
MutectVCFFilesToCatalog.Rd: BSgenome
MutectVCFFilesToCatalogAndPlotToPdf.Rd: BSgenome
MutectVCFFilesToZipFile.Rd: BSgenome
NormalizeGenomeArg.Rd: BSgenome
PlotTransBiasGeneExp.Rd: data.table
PlotTransBiasGeneExpToPdf.Rd: data.table
StrelkaSBSVCFFilesToCatalog.Rd: BSgenome
StrelkaSBSVCFFilesToCatalogAndPlotToPdf.Rd: BSgenome
StrelkaSBSVCFFilesToZipFile.Rd: BSgenome
VCFsToCatalogs.Rd: BSgenome
VCFsToCatalogsAndPlotToPdf.Rd: BSgenome
VCFsToDBSCatalogs.Rd: BSgenome
VCFsToSBSCatalogs.Rd: BSgenome
VCFsToZipFile.Rd: BSgenome
revc.Rd: reverseComplement
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64
Version: 2.3.12
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
'BSgenome.Hsapiens.1000genomes.hs37d5',
'BSgenome.Hsapiens.UCSC.hg38', 'BSgenome.Mmusculus.UCSC.mm10'
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 2.3.12
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
'BSgenome.Hsapiens.1000genomes.hs37d5',
'BSgenome.Mmusculus.UCSC.mm10'
Flavor: r-oldrel-windows-x86_64