Allelic Series Test

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Documentation for package ‘AllelicSeries’ version 0.1.1.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

Aggregator	Aggregator
ASBT	Allelic Series Burden Test
ASBTSS	Allelic Series Burden Test from Summary Statistics
ASKAT	Allelic Series SKAT Test
ASKATSS	Allelic Series SKAT-O from Summary Statistics
BaselineSS	Baseline Counts Test from Sumstats
CalcRegParam	Calculate Regression Parameters
CalcSumstats	Calculate Summary Statistics
CheckInputs	Check Inputs
CheckInputsSS	Input Checks for Summary Statistics
COAST	COding-variant Allelic Series Test
COAST-class	Allelic Series Output Class
COASTSS	COding-variant Allelic Series Test from Summary Statistics
Comparator	Comparator Test
CorCpp	Correlation C++
Counts	Count Variants and Carriers
DfOrNULL-class	Data.frame or Null Class
DGP	Data Generating Process
FilterGenos	Filter Noncausal Variants
GenAnno	Generate Genotype Annotations
GenCovar	Generate Covariates
GenGeno	Generate Genotypes
GenGenoMat	Generate Genotype Matrix
GenomicControl	Genomic Control
GenPheno	Generate Phenotypes
isPD	Check if Positive Definite
OLS	Ordinary Least Squares
print.COAST	Print Method for COAST Object.
ResidVar	Calculate Residual Variance
Score	Calculate Score Statistic
show-method	Show Method for COAST Object
SumCountSS	Allelic Sum Test from Sumstats