Estimating Lengths and Uncertainty from Photogrammetric Imagery


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Documentation for package ‘Xcertainty’ version 1.0.1

Help Pages

body_condition Compute body condition metrics for a set of measurements
body_condition_measurements Humpback whale measurement data from Duke University's Marine Robotics and Remote Sensing (MaRRS) Lab
body_condition_measurement_estimates Sample MCMC output
breakFun Break function (required in models)
calibration Calibration (training) data
calibration2 Calibration (training) data from Duke University's Marine Robotics and Remote Sensing (MaRRS) Lab
calibration_sampler MCMC sampler for calibration data
combine_observations Combine parsed observations into a single parsed object
co_data Calibration (training) data for gray whale example
flatten_data Reformat photogrammetric data for model-based analysis
growth_curve_sampler MCMC sampler for measurements of individuals with replicates and age information to generate growth curve
gw_data Gray whale measurement data
independent_length_sampler MCMC sampler for individuals with independent measurements.
nondecreasing_length_sampler MCMC sampler for measurements of individuals with replicates but no age information.
parse_observations Pre-process training and experimental data from wide-format to long-format
whales Gray whale metadata
whale_info Gray whale metadata