Characterise Tables of an OMOP Common Data Model Instance

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Documentation for package ‘OmopSketch’ version 0.1.2

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

mockOmopSketch	Creates a mock database to test OmopSketch package.
plotConceptCounts	Plot the concept counts of a summariseConceptCounts output.
plotInObservation	Create a ggplot2 plot from the output of summariseInObservation().
plotObservationPeriod	Create a plot from the output of summariseObservationPeriod().
plotRecordCount	Create a ggplot of the records' count trend.
summariseClinicalRecords	Summarise an omop table from a cdm object. You will obtain information related to the number of records, number of subjects, whether the records are in observation, number of present domains and number of present concepts.
summariseConceptCounts	Summarise code use in patient-level data
summariseInObservation	Summarise the number of people in observation during a specific interval of time.
summariseObservationPeriod	Summarise the observation period table getting some overall statistics in a summarised_result object.
summariseOmopSnapshot	Summarise a cdm_reference object creating a snapshot with the metadata of the cdm_reference object.
summarisePopulationCharacteristics	Summarise the characteristics of the base population of a cdm_reference object.
summariseRecordCount	Summarise record counts of an omop_table using a specific time interval. Only records that fall within the observation period are considered.
tableClinicalRecords	Create a visual table from a summariseClinicalRecord() output.
tableObservationPeriod	Create a visual table from a summariseObservationPeriod() result.
tableOmopSnapshot	Create a visual table from a summarise_omop_snapshot result.
tablePopulationCharacteristics	Create a visual table from a summarise_population_characteristics result.