minimapR: Wrapper for 'minimap2'
Wrapper for 'Minimap2'. 'Minimap2' is a very valuable long read aligner for the Pacbio and Oxford Nanopore Technologies sequencing platforms. 'minimapR' is an R wrapper for 'minimap2' which was developed by Heng Li <me@liheng.org>. *SPECIAL NOTES 1. Examples can only be run from 'GitHub' installation. 2. If using a Windows operating system, installation of the 'MSYS2' Linux emulator is required. 3. If using a Mac operating system, installation of 'Homebrew' is required. Li, Heng (2018) <doi:10.1093/bioinformatics/bty191> "Minimap2: pairwise alignment for nucleotide sequences".
| Version: | 0.0.1.0 |
| Depends: | R (≥ 4.0.0), Rsamtools, git2r, pafr |
| Suggests: | knitr, rmarkdown |
| Published: | 2024-07-21 |
| DOI: | 10.32614/CRAN.package.minimapR |
| Author: | Jake Reed  [aut,
cre],
Pradyun Pulipaka [ctb] |
| Maintainer: | Jake Reed <hreed.ga at gmail.com> |
| License: | MIT + file LICENSE |
| URL: | https://github.com/jake-bioinfo/minimapR |
| NeedsCompilation: | no |
| Materials: | README |
| CRAN checks: | minimapR results |
Documentation:
| Reference manual: | minimapR.pdf |
| Vignettes: |
Using minimapR |
Downloads:
| Package source: | minimapR_0.0.1.0.tar.gz |
| Windows binaries: | r-devel: not available, r-release: not available, r-oldrel: minimapR_0.0.1.0.zip |
| macOS binaries: | r-release (arm64): minimapR_0.0.1.0.tgz, r-oldrel (arm64): minimapR_0.0.1.0.tgz, r-release (x86_64): minimapR_0.0.1.0.tgz, r-oldrel (x86_64): minimapR_0.0.1.0.tgz |
Linking:
Please use the canonical form https://CRAN.R-project.org/package=minimapR to link to this page.