beautier: 'BEAUti' from R
'BEAST2' (<https://www.beast2.org>) is a widely used Bayesian phylogenetic tool, that uses DNA/RNA/protein data and many model priors to create a posterior of jointly estimated phylogenies and parameters. 'BEAUti 2' (which is part of 'BEAST2') is a GUI tool that allows users to specify the many possible setups and generates the XML file 'BEAST2' needs to run. This package provides a way to create 'BEAST2' input files without active user input, but using R function calls instead.
| Version: | 2.6.12 |
| Imports: | ape, rappdirs, purrr, rlang (≥ 1.1.0), seqinr, stringr |
| Suggests: | knitr, markdown, readr, rmarkdown, testthat (≥ 2.1.0) |
| Published: | 2024-04-01 |
| DOI: | 10.32614/CRAN.package.beautier |
| Author: | Richèl J.C. Bilderbeek
 [aut, cre],
Joëlle Barido-Sottani [rev] (Joëlle reviewed the package for rOpenSci,
see https://github.com/ropensci/onboarding/issues/209),
David Winter [rev] (David reviewed the package for rOpenSci, see
https://github.com/ropensci/onboarding/issues/209),
Paul Van Els
[ctb],
Raphael Scherrer
[ctb],
Yacine B. Chehida
[ctb],
Katharine S. Walter
[ctb],
Gary Napier [ctb],
Jason Griffiths
[ctb],
Thijs Janzen
[ctb],
Pedro Taucce
[ctb],
Olivier Roy [ctb],
Jana Riederer
[ctb] |
| Maintainer: | Richèl J.C. Bilderbeek <rjcbilderbeek at gmail.com> |
| BugReports: | https://github.com/ropensci/beautier/issues |
| License: | GPL-3 |
| URL: | https://docs.ropensci.org/beautier/, https://github.com/ropensci/beautier |
| NeedsCompilation: | no |
| Language: | en-US |
| Citation: | beautier citation info |
| In views: | Phylogenetics |
| CRAN checks: | beautier results |
Documentation:
| Reference manual: | beautier.pdf |
| Vignettes: |
beautier demo Examples Inference Models |
Downloads:
| Package source: | beautier_2.6.12.tar.gz |
| Windows binaries: | r-devel: beautier_2.6.12.zip, r-release: beautier_2.6.12.zip, r-oldrel: beautier_2.6.12.zip |
| macOS binaries: | r-release (arm64): beautier_2.6.12.tgz, r-oldrel (arm64): beautier_2.6.12.tgz, r-release (x86_64): beautier_2.6.12.tgz, r-oldrel (x86_64): beautier_2.6.12.tgz |
| Old sources: | beautier archive |
Reverse dependencies:
| Reverse depends: | babette |
| Reverse imports: | beastier, mcbette, nodeSub |
| Reverse suggests: | mauricer |
Linking:
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