Last updated on 2024-11-03 11:49:16 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.2.1 | 9.40 | 65.29 | 74.69 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 0.2.1 | 0.33 | 1.39 | 1.72 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.2.1 | 119.12 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 0.2.1 | 111.48 | NOTE | |||
| r-devel-windows-x86_64 | 0.2.1 | 11.00 | 75.00 | 86.00 | NOTE | |
| r-patched-linux-x86_64 | 0.2.1 | 9.64 | 60.73 | 70.37 | NOTE | |
| r-release-linux-x86_64 | 0.2.1 | 0.38 | 1.67 | 2.05 | ERROR | |
| r-release-macos-arm64 | 0.2.1 | 37.00 | NOTE | |||
| r-release-macos-x86_64 | 0.2.1 | 53.00 | NOTE | |||
| r-release-windows-x86_64 | 0.2.1 | 10.00 | 0.00 | 10.00 | FAIL | |
| r-oldrel-macos-arm64 | 0.2.1 | 40.00 | OK | |||
| r-oldrel-macos-x86_64 | 0.2.1 | 62.00 | OK | |||
| r-oldrel-windows-x86_64 | 0.2.1 | 14.00 | 89.00 | 103.00 | OK |
Version: 0.2.1
Check: Rd files
Result: NOTE
checkRd: (-1) bwgs.cv.Rd:27: Lost braces; missing escapes or markup?
27 | \item{geno}{Matrix (n x m) of genotypes for the training population: n lines with m markers. Genotypes should be coded {-1, 0, 1}. Missing data are allowed and coded as NA.}
| ^
checkRd: (-1) bwgs.cv.Rd:59: Lost braces; missing escapes or markup?
59 | \item{r2}{Coefficient of linkage disequilibrium (LD). Setting 0<r2<1 if the genotypic reduction method is in {LD or ANO+LD }.}
| ^
checkRd: (-1) bwgs.predict.Rd:25: Lost braces; missing escapes or markup?
25 | \item{geno_train}{Matrix (n x m) of genotypes for the training population: n lines with m markers. Genotypes should be coded as {-1, 0, 1, NA}. Missing data are allowed and coded as NA.}
| ^
checkRd: (-1) bwgs.predict.Rd:29: Lost braces; missing escapes or markup?
29 | \item{geno_target}{Matrix (z x m) of genotypes for the target population: z lines with the same m markers as in geno_train. Genotypes should be coded as {-1, 0, 1, NA}. Missing data are allowed and coded as NA. Other arguments are identical to those of bwgs.cv, except pop_reduct_method, nTimes and nFolds, since the prediction is run only once, using the whole training population for model estimation, then applied to the target population.}
| ^
checkRd: (-1) bwgs.predict.Rd:49: Lost braces; missing escapes or markup?
49 | \item{r2}{Coefficient of linkage disequilibrium (LD). Setting 0<r2<1 if the genotypic reduction method is in {LD or ANO+LD }.}
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64
Version: 0.2.1
Check: whether package can be installed
Result: ERROR
Installation failed.
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.2.1
Check: package dependencies
Result: ERROR
Package required but not available: ‘glmnet’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-release-linux-x86_64
Version: 0.2.1
Check: PDF version of manual
Result: FAIL
Check process probably crashed or hung up for 20 minutes ... killed
Most likely this happened in the example checks (?),
if not, ignore the following last lines of example output:
> nameEx("bwgs.predict")
> ### * bwgs.predict
>
> flush(stderr()); flush(stdout())
>
> ### Name: bwgs.predict
> ### Title: Computes the GEBV prediction for the target population with only
> ### genotypic Data using the options for model selection.
> ### Aliases: bwgs.predict
>
> ### ** Examples
>
>
>
>
> ### * <FOOTER>
> ###
> cleanEx()
> options(digits = 7L)
> base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n")
Time elapsed: 1.66 0.15 1.92 NA NA
> grDevices::dev.off()
null device
1
> ###
> ### Local variables: ***
> ### mode: outline-minor ***
> ### outline-regexp: "\\(> \\)?### [*]+" ***
> ### End: ***
> quit('no')
======== End of example output (where/before crash/hang up occured ?) ========
Flavor: r-release-windows-x86_64